FISIOLOGI PERTUMBUHAN, POTENSI AKTIFITAS PRODUKSI N2O DAN GEN FUNGSIONAL PENYANDINYA PADA BEBERAPA ISOLAT BAKTERI DENITRIFIKASI

Dwi Agustiyani, Nur Laili, Sarjiya Antonius
| Abstract views: 666 | PDF views: 1951

Abstract

Physiological characters of four denitrifying bacteria (Bacillus sp. CPNS, Bacillus thuringiensis UPT1, Brevundimonas diminuta EA1 and Bacillus sp. UPSB) were studied based on the growth ability on various nitrate concentrations and the production of N2O gas. The characters of denitrifying bacteria were also evaluated through the existence of functional genes nirS and nosZ, encoding the nitrite reduction and nitrous oxide reduction enzymes which have important role on denitrification processes. The study showed that Bacillus sp. UPSB and Bacillus sp. CPNS isolates have a linear growth with the increasing concentration of KNO3. The N2O gas production of Bacillus sp. UPSB isolate was relatively high, about 70 ?/l, Bacillus sp. CPNS isolate was 25?/l, while the Bacillus thuringiensis UPT1 isolate was 5 ?/l and Brevundimonas diminuta EA1 isolate was 8 ?/l. It was also indicated that both Bacillus sp. UPSB and Bacillus sp. CPNS had high deninitrification activities. It was confirmed that all isolates were contained functional gen of nirS and nosZ.

Keywords

denitrification activity, N2O gas, nirS, nosZ

Full Text:

PDF

References

Agustiyani, D., Laili, N., Imamuddin, H., Sulistinah, N. dan Antonius, S., 2013. Pengaruh penggunaan lahan yang berbeda terhadap populasi dan aktivitas denitrifikasi serta emisi gas N2O. Berita Biologi, 11(6), pp. 37 – 44.

Alley et al., 2007. IPCC Climate Change 2007: The Physical Science Basis. Contribution of Working Group I in the Third Assessment Report of Intergovernmental Panel on Climate Change. Report Summary for Policy Makers (SPM).

APHA (American Public Health Association). 1992. Standars Methods for the Examination of Wastewater.18th Ed. APHA. Washington. DC, USA.

Braker, G., Fesefldt, A. and Witzel, K.P., 1998. Development of PCR primer system for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples. Applied and Environmental Microbiology, 64(10), pp. 3769 – 3775.

Balderston, W.L., Sherr, B. and Payne, W.J., 1976. Blockage by acetylene of nitrous oxide reductionin Pseudomonas perfectomarinus. Applied and Environmental Microbiology, 31, pp. 504 – 508.

Betlach, M.R. and Tiedje, J.M., 1981. Kinetic explanation for accumulation of nitrite, nitric oxide, and nitrous oxide during bacterial denitrification. Applied and Environmental Microbiology, 42, pp. 1074 – 1084.

Choudhary, M.A., Akramkhanov, A. and Saggar, S., 2002. Nitrous oxide emission from a New Zealand cropped soil: tillage effects, spatial and seasonal variability. Agriculture, Ecosystems & Environment, 93, pp. 33 – 43.

Dandie, C. E., Burton, D.L., Zebarth, B.J., Henderson, S.L., Trevors, J.T. and Goyer, C. 2008. Changes in bacterial denitrifier community abundance over time in an agricultural field and their relationship with denitrification activity. Applied and Environmental MIcrobiology, 74(19), pp. 5997 – 6005.

DPU (Departemen Pekerjaan Umum). 1990. Kumpulan SNI Bidang Pekerjaan Umum Mengenai Kualitas Air. Departemen Pekerjaan Umum, Jakarta.

Groffman, P.M., Altabet, M.A., Böhlke, J.K., Butterbach-Bahl, K., David, M.B., et al., 2006. Methods for measuring denitrification: Diverse approaches to a difficult problem. Ecological Applications 16, pp. 2091–2122.

Hayatsu, M., Tago K. and Saito, M., 2008. Various players in the nitrogen cycle: diversity and functions of the microorganismsinvolved in nitrification and denitrification. Soil Science and Plant Nutrition, 54, pp. 33 – 45

Kesser?, P., Kiss, I., Bihari, Z. and Polyák, B., 2003. Biological denitrification in a continuous flow pilot bioreactor containing immobilizes pseudomonas butannovora Cells. Bioresource Technology, 87, pp. 75 ? 80.

Lukow, T. and Diekmann, H., 1997. Aerobic denitrification by a newly isolated heterotrophic Bacterium Strain TL1. Biotechnology Letters, 11, pp. 1157 – 1159

Mahne, I. and Tiedje, J.M., 1995. Criteria and methodology for identifying respiratory denitrifiers. Applied and Environmental Microbiology. 61(3), pp. 1110 – 1115.

McKenney et al., 1994. Kinetics of denitrification by Pseudomonas fluorescens oxygen effects. Soil

Biology and Biochemistry, 26, pp. 901 – 908

Palys T, Nakamura, L.K. and Cohan, F.M., 1997. “Discovery and classification of ecological diversity in the bacterial world: the role of DNA sequence data”. International Journal of Systematic Bacteriology, 47, pp. 1145 – 1156

Philippot, L., Hallin, S. and Schloter, M., 2007. Ecology of denitrifying prokaryotes in agricultural soil. Advances in Agronomy, 96, pp. 249 – 305.

Pratscher, J., Stichternoth, C., Fichtl, K., Schleifer, K.H. and Braker, G., 2009. Application of recognition of individual genes-fluorescence in situ hybridization (RING-FISH) to detect nitrite reductase genes (nirK) of denitrifiers in pure cultures and environmental samples. Applied and Environmental Microbiology, 75, pp. 802 – 810.

Prieme, A., Braker, G. and Tiedje, J.M., 2002. Diversity of nitrite reductase (nirK and nirS) gene fragments in forested upland and wetland soils. Current Opinion in Microbiology, 68 (4), pp. 1893 – 1900.

Qiu, X.Y., Hurt, R.A, Wu, L.Y., Chen, C.H., Tiedje, J.M. and Zhou, J.Z., 2004. Detection and quantification of copper-denitrifying bacteria by quantitative competitive PCR. Journal of Microbiological Methods, 59 (2), pp. 199 – 210.

Rich and Myrold. 2004. Community composition and activities of denitrifying bacteria from adjacent agricultural soil, riparian soil, and creek sediment on Oregon, USA. Soil Biology & Biochemistry, 36, pp. 1431 – 1441

Robertson, L.A. and Kuenen, J.G. 1983.Thiosphaerapantotropha gen. nov. sp. nov., a Facultatively Anaerobic, Facultatively Autotrophic Sulphur Bacterium. Journal of General Microbiology, 129, pp. 2847– 2855.

Seinfeld, J.H. and Pandis, S.N., 1997. Atmospheric Chemistry and Physics. John Wiley and Sons. New York.

Smibert, R.M. and Krieg, N.R., 1981. Nitrite reduction and denitrification, p.419. In P. Gerhardt., RGE Murray, RN Costilow, EW Nester, WA Wood, NR Krieg and GB Philips (ed), Manual of methods for general bacteriology. American Society for Microbiology. Washington, D.C.

Smith, M.S., Firestone, M.K. and Tiedje, J.M., 1978. The acetylene inhibition method for short-term measurement of soil denitrification and its evaluation using nitrogen-13. Soil Science Society of America Journal, 42, pp. 611 – 615.

Texeira, P. and Oliveira R., 2002.Metabolism of Alcaligenes denitrificans in biofilm vs planktonic cells. Journal of Applied Microbiology, 92, pp. 256 – 260.

Thauer, R.K., Jungmann, K. and Decker, K., 1977. Energy conservation in chemotrophic anaerobic bacteria. Bacteriological Reviews, 41, pp. 100 – 180.

Throback, I.N., Enwall, K., Jarvis A. and Hallin, S., 2004. Reassessing PCR primers targeting nirS, nirK and nosZ genes for community surveys of denitrifying bacteria with DGGE. FEMS Microbiology Ecology, 49(3), pp. 401 – 407.

Valera, C.L. and Alexander, M., 1961. Nutrition and physiology of denitrifying bacteria. Plant soil, 15, pp. 268 – 280.

Wallenstein, M. D., Myrold, D.D., Firestone, M. and Voytek, M. 2006. Environmental controls on denitrifying communities and denitrification rates: Insights from molecular methods. Ecological Applications, 16(6), pp. 2143 – 2152.

Wood, D. W., Setubal, J. C., Kaul, R., Monks, D. E., Kitajima, J. P., Okura, V. K., Zhou, Y., Chen, L., Wood, G. E., Almeida N.F, Jr., Woo, L., Chen, Y., Paulsen, I. T., Eisen, J. A., Karp, P. D., Bovee D, Sr., Chapman, P., Clendenning, J., Deatherage, G., Gillet, W., Grant, C., Kutyavin, T., Levy, R., Li, M. J., McClelland, E., Palmieri, A., Raymond, C., Rouse, G., Saenphimmachak, C., Wu, Z., Romero, P., Gordon, D., Zhang, S., Yoo, H., Tao, Y., Biddle, P., Jung, M., Krespan, W., Perry, M., Gordon-Kamm, B., Liao, L., Kim, S., Hendrick, C., Zhao, Z. Y., Dolan, M., Chumley, F., Tingey, S. V., Tomb, J. F., Gordon, M. P., Olson, M. V., and Nester, E. W., 2001. The genome of the natural genetic engineer Agrobacterium tumefaciens C58. Science, 294(5550), pp. 2317 – 2323.

Yoshinari, T. and Knowles, R., 1976.Acetylene inhibition of nitrous oxide reduction by denitrifying bacteria. Biochemical and Biophysical Research Communications, 69 (3), pp. 705 – 710.

Zheng, X., Fu, C., Xu, X., Yan, X., Huang, Y., Chen, G., Han. S., Hu, F., 2002. The Asian nitrogen cycle case study. AMBIO, 31, pp. 79 – 87.

Zumft, W.G., 1992. The denitrifying procaryotes. In: A. Balows et al. (ed.) The prokaryotes. Vol. I. 2nd ed. Springer-Verlag, New York.

Zumft, W.G., 1997. Cell biology and molecular basis of denitrification. Microbiology and Molecular Biology Reviews, 61 (4), pp. 533 – 616.

Zheng, X., Fu, C., Xu, X., Yan, X., Huang, Y., Chen, G., Han. S. and Hu, F., 2002. The Asian nitrogen cycle case study. AMBIO, 31, pp. 79 – 87.


Refbacks

  • There are currently no refbacks.